Basic Information
Locus ID:
CQ.Regalona.r1.5BG0022870
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Zinc ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5B | 72235846 | 72249000 | - | CQ.Regalona.r1.5BG0022870 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.98 | 139,754.16 Da | 57.98 | 78.25 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 27 | 167 | 1.91023E-24 | - |
| CDD | cd12108 | Hr-like | 598 | 744 | 1.79614E-19 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1110 | 1152 | 5.90132E-20 | - |
| Pfam | PF13639 | Ring finger domain | 1108 | 1151 | 5.2E-8 | IPR001841 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 598 | 745 | 2.7E-6 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 24 | 169 | 3.1E-9 | IPR012312 |
| Pfam | PF14599 | Zinc-ribbon | 1157 | 1214 | 1.2E-21 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 979 | 1055 | 6.3E-16 | IPR008913 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1101 | 1156 | 1.1E-8 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1046 | 1103 | 2.22E-16 | IPR037275 |
| Gene3D | G3DSA:2.20.28.10 | - | 1181 | 1216 | 2.8E-16 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 588 | 794 | 3.2E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1103 | 1154 | 2.0E-10 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 23 | 186 | 2.5E-20 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 289 | 437 | 1.3E-6 | - |
| SMART | SM00184 | ring_2 | 1110 | 1151 | 2.9E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1110 | 1152 | 11.648357 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 972 | 1042 | 23.489897 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1045 | 1109 | 27.115389 | IPR017921 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18910.1 | zinc ion binding;zinc ion binding. | 0 |
| RefSeq | XP_021733753.1 | zinc finger protein BRUTUS-like At1g18910 isoform X1 [Chenopodium quinoa] | 0 |
| F4IDY5 | Zinc finger protein BRUTUS-like At1g18910 OS=Arabidopsis thaliana OX=3702 GN=At1g18910 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803L903 | Zinc finger protein BRUTUS OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology