Basic Information
Locus ID:
CQ.Regalona.r1.5BG0020740
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
F-box Kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5B | 69468201 | 69472154 | + | CQ.Regalona.r1.5BG0020740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.36 | 60,429.59 Da | 45.73 | 68.98 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 23 | 64 | 6.6E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 32 | 74 | 3.27E-8 | IPR036047 |
| SMART | SM00256 | fbox_2 | 28 | 68 | 0.0054 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 22 | 67 | 8.782121 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 420 | 528 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 433 | 455 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 456 | 528 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23880.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_021733996.1 | F-box/kelch-repeat protein At3g23880-like [Chenopodium quinoa] | 0 |
| Q9LIR8 | F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana OX=3702 GN=At3g23880 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803L9K0 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 13 | Ah001920, Ah003798, Ah004407, Ah004408, Ah004409, Ah008157 ... |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_9g204180, BVRB_9g219200 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg17163, Sbi_jg27532, Sbi_jg52462, Sbi_jg61771 |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg20871, Seu_jg423, Seu_jg7781 |
| Amaranthaceae | Suaeda aralocaspica | 11 | GOSA_00000873, GOSA_00000881, GOSA_00011522, GOSA_00011523 ... |
| Amaranthaceae | Suaeda glauca | 22 | Sgl11782, Sgl17271, Sgl24939, Sgl30083, Sgl33301, Sgl38521 ... |
| Amaranthaceae | Chenopodium album | 10 | gene:ENSEOMG00000016276, gene:ENSEOMG00000021311 ... |
| Amaranthaceae | Chenopodium quinoa | 15 | CQ.Regalona.r1.3BG0025960, CQ.Regalona.r1.3BG0025970 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_057782 |