Basic Information
Locus ID:
CQ.Regalona.r1.5BG0016800
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Zinc finger protein VAR3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5B | 56609607 | 56618267 | - | CQ.Regalona.r1.5BG0016800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.02 | 42,908.81 Da | 45.24 | 74.63 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 300 | 328 | 8.4E-6 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 262 | 285 | 3.2E-6 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 298 | 329 | 1.73E-6 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 258 | 289 | 5.97E-6 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 330 | 362 | 8.0E-9 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 254 | 292 | 2.3E-11 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 293 | 329 | 9.5E-12 | - |
| SMART | SM00547 | zf_4 | 335 | 359 | 0.0024 | IPR001876 |
| SMART | SM00547 | zf_4 | 264 | 288 | 7.3E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 302 | 326 | 1.9E-4 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 300 | 329 | 10.251829 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 262 | 291 | 9.856602 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 333 | 362 | 8.67092 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 337 | 356 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 304 | 323 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 266 | 285 | - | IPR001876 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48570.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_021759303.1 | zinc finger protein VAR3, chloroplastic-like [Chenopodium quinoa] | 0 |
| TrEMBL | A0A0K9QPR9 | Zinc finger protein VAR3, chloroplastic OS=Spinacia oleracea OX=3562 GN=SOVF_155050 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology