Basic Information
Locus ID:
CQ.Regalona.r1.5BG0016520
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
AMSH-like ubiquitin thioesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5B | 55245628 | 55257904 | - | CQ.Regalona.r1.5BG0016520 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.58 | 58,389.01 Da | 59.03 | 84.47 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 343 | 517 | 1.60359E-105 | IPR044098 |
| Pfam | PF08969 | USP8 dimerisation domain | 9 | 104 | 6.5E-13 | IPR015063 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 342 | 446 | 6.4E-18 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 341 | 473 | 5.89E-21 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 1 | 118 | 1.4E-29 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 324 | 517 | 4.2E-71 | - |
| SMART | SM00232 | pad1_6 | 342 | 470 | 9.7E-17 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 343 | 473 | 31.295897 | IPR037518 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 280 | - | - |
| Coils | Coil | Coil | 91 | 111 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_021727742.1 | AMSH-like ubiquitin thioesterase 1 [Chenopodium quinoa] | 0 |
| Q8VYB5 | AMSH-like ubiquitin thioesterase 1 OS=Arabidopsis thaliana OX=3702 GN=AMSH1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RBA7 | MPN domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_086080 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology