Basic Information
Locus ID:
CQ.Regalona.r1.5BG0016330
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Tubulin is the major constituent of microtubules. The gamma chain is found at microtubule organizing centers (MTOC) such as the spindle poles or the centrosome
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5B | 53508441 | 53513823 | + | CQ.Regalona.r1.5BG0016330 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.31 | 24,434.33 Da | 51.18 | 74.60 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00091 | Tubulin/FtsZ family, GTPase domain | 164 | 207 | 4.2E-11 | IPR003008 |
| SUPERFAMILY | SSF52490 | Tubulin nucleotide-binding domain-like | 167 | 207 | 3.14E-12 | IPR036525 |
| Gene3D | G3DSA:3.40.50.1440 | Tubulin/FtsZ, GTPase domain | 110 | 210 | 7.1E-13 | IPR036525 |
| ProSitePatterns | PS00227 | Tubulin subunits alpha, beta, and gamma signature. | 200 | 206 | - | IPR017975 |
| PRINTS | PR01161 | Tubulin signature | 166 | 190 | 2.9E-9 | IPR000217 |
| PRINTS | PR01161 | Tubulin signature | 192 | 210 | 2.9E-9 | IPR000217 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 77 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 77 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61650.1 | gamma-tubulin. Required for centrosomal and noncentrosomal microtubule nucleation. Involved in specification of cell identity, such as stomatal patterning. Constitutively expressed throughout plant. | 0 |
| RefSeq | XP_021728102.1 | uncharacterized protein LOC110695188 [Chenopodium quinoa] | 0 |
| P34785 | Tubulin gamma chain OS=Anemia phyllitidis OX=12940 GN=TUBG PE=2 SV=1 | 0 | |
| TrEMBL | A0A803MR84 | Tubulin domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology