Basic Information
Locus ID:
CQ.Regalona.r1.5BG0014260
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5B | 30550226 | 30554503 | + | CQ.Regalona.r1.5BG0014260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 113,246.72 Da | 45.65 | 65.47 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 467 | 782 | 2.59025E-38 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 758 | 782 | 0.011 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 613 | 649 | 0.0025 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 469 | 500 | 3.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 571 | 607 | 2.0E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 463 | 787 | 1.55E-54 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 453 | 808 | 1.8E-57 | IPR015943 |
| SMART | SM00320 | WD40_4 | 740 | 782 | 0.03 | IPR001680 |
| SMART | SM00320 | WD40_4 | 569 | 607 | 1.9E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 610 | 649 | 9.8E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 694 | 739 | 1.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 462 | 501 | 5.7E-7 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 576 | 616 | 13.783434 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 576 | 609 | 11.049229 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 616 | 650 | 13.048234 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 616 | 650 | 10.838322 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 469 | 503 | 10.864685 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 761 | 791 | 9.305395 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 469 | 503 | 13.081652 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 488 | 502 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 594 | 608 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 636 | 650 | 1.6E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 488 | 502 | 1.6E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 594 | 608 | 1.6E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 142 | 183 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 183 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 834 | 854 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 819 | 854 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 257 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 145 | 164 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 886 | 912 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 277 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 533 | 554 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 886 | 935 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37670.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_021750711.1 | WD repeat-containing protein 44-like [Chenopodium quinoa] | 0 |
| Q498F0 | WD repeat-containing protein 44 OS=Xenopus laevis OX=8355 GN=wdr44 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803N610 | WD_REPEATS_REGION domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology