Basic Information
Locus ID:
CQ.Regalona.r1.5BG0011820
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
ubiquitinyl hydrolase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5B | 17432399 | 17448651 | + | CQ.Regalona.r1.5BG0011820 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.18 | 105,194.89 Da | 45.21 | 82.60 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 380 | 936 | 3.1E-68 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 378 | 936 | 1.96E-88 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 682 | 937 | 2.5E-36 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 369 | 602 | 2.5E-63 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 380 | 937 | 45.696678 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 381 | 396 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 915 | 932 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22030.1 | ubiquitin-specific protease 8. | 0 |
| RefSeq | XP_021771249.1 | ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Chenopodium quinoa] | 0 |
| Q9C585 | Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803MJX1 | Ubiquitin carboxyl-terminal hydrolase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology