Basic Information
Locus ID:
CQ.Regalona.r1.5BG0010590
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Short Name:
PDC3
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5B | 13719179 | 13724866 | - | CQ.Regalona.r1.5BG0010590 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 65,947.54 Da | 28.31 | 90.18 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02005 | TPP_PDC_IPDC | 407 | 594 | 1.85979E-86 | - |
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 48 | 207 | 2.27377E-90 | - |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 45 | 212 | 8.4E-35 | IPR012001 |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 242 | 359 | 9.2E-19 | IPR012000 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 457 | 582 | 3.3E-15 | IPR011766 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 233 | 384 | 2.57E-31 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 45 | 219 | 1.32E-43 | IPR029061 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 407 | 606 | 4.51E-40 | IPR029061 |
| Gene3D | G3DSA:3.40.50.970 | - | 400 | 596 | 5.9E-53 | - |
| Gene3D | G3DSA:3.40.50.1220 | - | 232 | 394 | 3.7E-40 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 42 | 218 | 2.7E-59 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 39 | 606 | 9.6E-207 | IPR012110 |
| ProSitePatterns | PS00187 | Thiamine pyrophosphate enzymes signature. | 471 | 490 | - | IPR000399 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54960.1 | pyruvate decarboxylase-2. pyruvate decarboxylase-2 | 0 |
| RefSeq | XP_021744739.1 | pyruvate decarboxylase 2-like [Chenopodium quinoa] | 0 |
| Q9FFT4 | Pyruvate decarboxylase 2 OS=Arabidopsis thaliana OX=3702 GN=PDC2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QMI0 | pyruvate decarboxylase OS=Spinacia oleracea OX=3562 GN=SOVF_162420 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology