Basic Information
Locus ID:
CQ.Regalona.r1.5BG0006860
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
ATPase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5B | 7613334 | 7621283 | + | CQ.Regalona.r1.5BG0006860 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.64 | 92,839.97 Da | 44.39 | 88.83 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 555 | 688 | 6.51093E-24 | - |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 557 | 687 | 7.2E-39 | IPR003959 |
| Pfam | PF17862 | AAA+ lid domain | 711 | 753 | 9.5E-11 | IPR041569 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 517 | 757 | 5.18E-60 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 689 | 792 | 4.6E-96 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 516 | 799 | 4.6E-96 | IPR027417 |
| SMART | SM00382 | AAA_5 | 553 | 690 | 5.5E-21 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 660 | 679 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 431 | 500 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 750 | 772 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 431 | 467 | - | - |
| Coils | Coil | Coil | 749 | 769 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G64110.2 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_021757579.1 | peroxisomal biogenesis factor 6 isoform X1 [Chenopodium quinoa] | 0 |
| Q6NW58 | Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2 | 0 | |
| TrEMBL | A0A803LWC1 | AAA domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology