Basic Information
Locus ID:
CQ.Regalona.r1.5BG0006550
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
SPA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5B | 7069288 | 7079888 | + | CQ.Regalona.r1.5BG0006550 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 115,565.62 Da | 41.36 | 77.55 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 725 | 1042 | 1.02924E-37 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 907 | 938 | 0.02 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 816 | 854 | 0.023 | IPR001680 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 287 | 544 | 3.23E-14 | IPR011009 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 728 | 1043 | 5.63E-51 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 704 | 1046 | 3.9E-125 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 286 | 548 | 3.0E-18 | - |
| SMART | SM00320 | WD40_4 | 1005 | 1044 | 31.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 949 | 988 | 160.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 772 | 811 | 0.036 | IPR001680 |
| SMART | SM00320 | WD40_4 | 722 | 761 | 0.031 | IPR001680 |
| SMART | SM00320 | WD40_4 | 857 | 896 | 0.023 | IPR001680 |
| SMART | SM00320 | WD40_4 | 814 | 854 | 7.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 900 | 938 | 6.2E-5 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 907 | 940 | 10.653776 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 778 | 820 | 9.271977 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 907 | 947 | 13.215325 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 821 | 863 | 10.307941 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 798 | 812 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 925 | 939 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 841 | 855 | 5.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 925 | 939 | 5.5E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 798 | 812 | 5.5E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 24 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11110.1 | SPA1-related 2. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants. | 0 |
| RefSeq | XP_021757615.1 | protein SPA1-RELATED 2-like isoform X1 [Chenopodium quinoa] | 0 |
| Q9T014 | Protein SPA1-RELATED 2 OS=Arabidopsis thaliana OX=3702 GN=SPA2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803LWF1 | Protein SPA1-RELATED 2-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology