Basic Information
Locus ID:
CQ.Regalona.r1.5BG0003540
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Vacuolar protein sorting-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5B | 3862486 | 3908247 | + | CQ.Regalona.r1.5BG0003540 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.53 | 466,229.31 Da | 44.95 | 90.33 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00169 | PH domain | 799 | 910 | 1.3E-8 | IPR001849 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 134 | 375 | 1.8E-66 | IPR031646 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 558 | 779 | 7.7E-29 | IPR031642 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3186 | 3461 | 1.4E-14 | IPR009543 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 110 | 5.1E-32 | IPR026854 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2184 | 2331 | 1.1E-7 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1957 | 2107 | 8.7E-12 | IPR009291 |
| SUPERFAMILY | SSF50729 | PH domain-like | 791 | 930 | 2.04E-10 | - |
| Gene3D | G3DSA:2.30.29.30 | - | 794 | 915 | 6.1E-8 | IPR011993 |
| SMART | SM00233 | PH_update | 797 | 912 | 3.8E-8 | IPR001849 |
| ProSiteProfiles | PS50003 | PH domain profile. | 796 | 910 | 10.9634 | IPR001849 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1806 | 1829 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1811 | 1828 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 3214 | 3234 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 3216 | 3234 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17140.3 | pleckstrin homology (PH) domain-containing protein. | 0 |
| RefSeq | XP_021765742.1 | uncharacterized protein LOC110730261 isoform X3 [Chenopodium quinoa] | 0 |
| Q54LB8 | Intermembrane lipid transfer protein vps13A OS=Dictyostelium discoideum OX=44689 GN=vps13A PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LUA7 | PH domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology