Basic Information
Locus ID:
CQ.Regalona.r1.5BG0002920
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
PWWP domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5B | 3229792 | 3233764 | + | CQ.Regalona.r1.5BG0002920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.55 | 116,743.38 Da | 51.10 | 64.43 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05162 | PWWP | 212 | 298 | 8.07653E-31 | - |
| Pfam | PF00855 | PWWP domain | 212 | 298 | 9.2E-21 | IPR000313 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 211 | 315 | 1.75E-29 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 203 | 308 | 6.9E-28 | - |
| SMART | SM00293 | PWWP_4 | 212 | 273 | 1.2E-12 | IPR000313 |
| ProSiteProfiles | PS50812 | PWWP domain profile. | 214 | 275 | 14.100221 | IPR000313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 497 | 703 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 538 | 636 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 465 | 485 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 742 | 771 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 732 | 771 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 823 | 862 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 678 | 701 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 818 | 886 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 868 | 883 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 501 | 530 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 986 | 1012 | - | - |
| Coils | Coil | Coil | 1044 | 1064 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40340.2 | - | 0 |
| RefSeq | XP_021765690.1 | uncharacterized protein LOC110730216 [Chenopodium quinoa] | 0 |
| Q9FNE4 | PWWP domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=PDP3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LU53 | PWWP domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology