Basic Information
Locus ID:
CQ.Regalona.r1.5BG0001920
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
protein tag
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5B | 2207461 | 2213537 | + | CQ.Regalona.r1.5BG0001920 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.34 | 53,151.24 Da | 40.11 | 86.77 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01763 | Ubl_SUMO_like | 37 | 113 | 1.77224E-11 | - |
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 213 | 276 | 1.4E-5 | IPR022617 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 212 | 275 | 3.19E-6 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 23 | 114 | 9.76E-10 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 121 | 195 | 1.32E-7 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 125 | 199 | 3.2E-11 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 27 | 118 | 9.0E-16 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 209 | 275 | 4.6E-8 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 386 | 462 | 2.4E-7 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 276 | 376 | 8.7E-8 | - |
| Coils | Coil | Coil | 275 | 295 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021768257.1 | uncharacterized protein LOC110732604 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803LTV5 | Ubiquitin-like domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_2153, gene_2154 |
| Amaranthaceae | Atriplex hortensis | 6 | Ah004369, Ah004371, Ah004372, Ah004373, Ah004402, Ah012689 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51245, Sgl56548 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000024781, gene:ENSEOMG00000025028 |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.5AG0001770, CQ.Regalona.r1.5AG0001780 ... |