Basic Information
Locus ID:
CQ.Regalona.r1.5AG0027040
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
PAPA-1-like family protein zinc finger (HIT type) family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5A | 71188091 | 71193878 | - | CQ.Regalona.r1.5AG0027040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.58 | 64,006.12 Da | 58.66 | 47.04 | -1.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04795 | PAPA-1-like conserved region | 438 | 522 | 3.6E-17 | IPR006880 |
| Pfam | PF04438 | HIT zinc finger | 537 | 568 | 1.8E-7 | IPR007529 |
| SMART | SM01406 | PAPA_1_2 | 437 | 522 | 5.0E-22 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 252 | 272 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 428 | 477 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 80 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 206 | 224 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 232 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 307 | 488 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 366 | 394 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 307 | 322 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 190 | 205 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 292 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 341 | 355 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 125 | 158 | - | - |
| Coils | Coil | Coil | 426 | 468 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47350.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_021770059.1 | protein IWS1 homolog [Chenopodium quinoa] | 0 |
| TrEMBL | A0A0K9RW66 | PAPA-1 domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_027370 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology