Basic Information
Locus ID:
CQ.Regalona.r1.5AG0025070
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5A | 68882754 | 68885094 | - | CQ.Regalona.r1.5AG0025070 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 63,591.79 Da | 40.96 | 69.63 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 110 | 161 | 2.48928E-12 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 110 | 141 | 1.3E-4 | IPR018957 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 270 | 313 | 6.5E-8 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 180 | 246 | 9.7E-13 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 105 | 189 | 3.53E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 265 | 312 | 8.48E-15 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 194 | 253 | 4.41E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 104 | 190 | 6.2E-16 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 242 | 503 | 1.1E-70 | - |
| SMART | SM00647 | ibrneu5 | 180 | 246 | 1.5E-17 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 250 | 313 | 0.033 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 106 | 317 | 42.978302 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 110 | 160 | 10.143551 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 507 | 526 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G31510.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_021762673.1 | probable E3 ubiquitin-protein ligase ARI7 [Chenopodium quinoa] | 0 |
| Q84RR0 | Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana OX=3702 GN=ARI7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803MFJ4 | RBR-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology