Basic Information
Locus ID:
CQ.Regalona.r1.5AG0025060
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5A | 68875812 | 68877344 | - | CQ.Regalona.r1.5AG0025060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.14 | 58,236.84 Da | 56.21 | 67.64 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 122 | 172 | 3.1814E-15 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 191 | 253 | 1.1E-15 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 275 | 317 | 1.8E-7 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 272 | 320 | 3.35E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 191 | 260 | 1.08E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 117 | 203 | 4.71E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 116 | 206 | 2.0E-15 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 249 | 499 | 1.2E-75 | - |
| SMART | SM00647 | ibrneu5 | 191 | 253 | 4.8E-19 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 257 | 327 | 0.44 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 118 | 331 | 44.803894 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 122 | 168 | 8.71251 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 27 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G31510.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_021764388.1 | probable E3 ubiquitin-protein ligase ARI7 [Chenopodium quinoa] | 0 |
| Q84RR0 | Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana OX=3702 GN=ARI7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803MFJ5 | RBR-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology