Basic Information
Locus ID:
CQ.Regalona.r1.5AG0024080
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5A | 67909331 | 67910124 | - | CQ.Regalona.r1.5AG0024080 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.67 | 26,584.56 Da | 36.44 | 87.91 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 42 | 78 | 6.9E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 42 | 89 | 1.13E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 39 | 97 | 2.1E-8 | - |
| SMART | SM00256 | fbox_2 | 43 | 83 | 1.5E-5 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 135 | 202 | 1.2E-10 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 37 | 87 | 9.868391 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23880.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_021734117.1 | F-box/kelch-repeat protein At3g23880-like [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803MFU1 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda glauca | 3 | Sgl46363, Sgl46369, Sgl51076 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.5AG0024080 |