Basic Information
Locus ID:
CQ.Regalona.r1.5AG0021980
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5A | 65494226 | 65498472 | - | CQ.Regalona.r1.5AG0021980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 109,520.35 Da | 33.79 | 103.43 | 0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 590 | 828 | 1.27502E-55 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 9 | 259 | 4.04705E-66 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 285 | 488 | 1.14471E-107 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 591 | 690 | 1.2E-9 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 20 | 251 | 2.0E-14 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 693 | 783 | 1.1E-5 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 870 | 970 | 1.6E-18 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 306 | 440 | 6.3E-20 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 14 | 265 | 8.76E-19 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 589 | 835 | 1.31E-33 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 286 | 512 | 4.51E-55 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 845 | 980 | 2.5E-31 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 3 | 268 | 1.3E-29 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 691 | 834 | 8.9E-21 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 269 | 537 | 2.6E-72 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 836 | 983 | 2.1E-41 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 555 | 690 | 8.2E-16 | IPR036640 |
| SMART | SM00382 | AAA_5 | 315 | 488 | 5.3E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 879 | 985 | 1.8 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 285 | 511 | 21.608755 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 591 | 690 | 13.524658 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 1 | 264 | 22.725534 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 692 | 816 | 10.446291 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 413 | 427 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021855160.1 | ABC transporter C family member 3-like [Spinacia oleracea] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803L8V8 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology