Basic Information
Locus ID:
CQ.Regalona.r1.5AG0021480
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Zinc ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5A | 64778071 | 64790716 | - | CQ.Regalona.r1.5AG0021480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 141,536.19 Da | 60.19 | 78.00 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 27 | 165 | 1.85477E-21 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1125 | 1167 | 7.18859E-20 | - |
| CDD | cd12108 | Hr-like | 615 | 760 | 3.04195E-19 | - |
| Pfam | PF05495 | CHY zinc finger | 995 | 1070 | 1.9E-16 | IPR008913 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 24 | 165 | 8.7E-6 | IPR012312 |
| Pfam | PF14599 | Zinc-ribbon | 1172 | 1229 | 6.1E-21 | IPR039512 |
| Pfam | PF13639 | Ring finger domain | 1123 | 1166 | 5.3E-8 | IPR001841 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1061 | 1118 | 2.35E-16 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 989 | 1051 | 4.18E-15 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1115 | 1171 | 1.02E-8 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 24 | 174 | 2.5E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1118 | 1169 | 2.1E-10 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 306 | 454 | 1.4E-6 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 605 | 810 | 1.9E-18 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 1196 | 1231 | 2.8E-16 | - |
| SMART | SM00184 | ring_2 | 1125 | 1166 | 2.9E-5 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 988 | 1057 | 23.449715 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1125 | 1167 | 11.648357 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1060 | 1124 | 27.115389 | IPR017921 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18910.1 | zinc ion binding;zinc ion binding. | 0 |
| RefSeq | XP_021761695.1 | zinc finger protein BRUTUS-like At1g18910 isoform X1 [Chenopodium quinoa] | 0 |
| F4IDY5 | Zinc finger protein BRUTUS-like At1g18910 OS=Arabidopsis thaliana OX=3702 GN=At1g18910 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803M1C4 | GCFC domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology