Basic Information
Locus ID:
CQ.Regalona.r1.5AG0019370
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Ras GTPase-activating protein-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5A | 61599171 | 61608351 | - | CQ.Regalona.r1.5AG0019370 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.19 | 49,662.25 Da | 56.34 | 64.48 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00590 | RRM_SF | 305 | 362 | 6.00203E-13 | - |
| CDD | cd00780 | NTF2 | 13 | 135 | 9.72058E-47 | IPR018222 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 305 | 362 | 2.7E-13 | IPR000504 |
| Pfam | PF02136 | Nuclear transport factor 2 (NTF2) domain | 17 | 133 | 6.3E-29 | IPR002075 |
| SUPERFAMILY | SSF54427 | NTF2-like | 13 | 134 | 6.23E-38 | IPR032710 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 297 | 406 | 8.33E-17 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 281 | 386 | 8.9E-17 | IPR012677 |
| Gene3D | G3DSA:3.10.450.50 | - | 6 | 137 | 3.9E-38 | - |
| SMART | SM00360 | rrm1_1 | 304 | 375 | 1.2E-13 | IPR000504 |
| ProSiteProfiles | PS50177 | Nuclear transport factor 2 domain profile. | 17 | 133 | 32.430313 | IPR018222 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 303 | 379 | 13.123163 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 380 | 464 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 208 | 233 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 291 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 154 | 233 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 381 | 395 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 183 | 205 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 301 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 449 | 464 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60980.1 | Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain. | 0 |
| RefSeq | XP_021761478.1 | ras GTPase-activating protein-binding protein 1-like [Chenopodium quinoa] | 0 |
| Q9FME2 | Nuclear transport factor 2 OS=Arabidopsis thaliana OX=3702 GN=NTF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803M0R5 | G3BP-like protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology