Basic Information
Locus ID:
CQ.Regalona.r1.5AG0017000
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Belongs to the STXBP unc-18 SEC1 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5A | 55572080 | 55582351 | - | CQ.Regalona.r1.5AG0017000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.95 | 93,323.86 Da | 41.48 | 89.48 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF56815 | Sec1/munc18-like (SM) proteins | 175 | 331 | 4.32E-8 | IPR036045 |
| SUPERFAMILY | SSF56815 | Sec1/munc18-like (SM) proteins | 768 | 842 | 6.41E-9 | IPR036045 |
| Gene3D | G3DSA:3.40.50.1910 | - | 743 | 842 | 2.7E-5 | IPR027482 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 345 | 365 | - | - |
| Coils | Coil | Coil | 138 | 158 | - | - |
| Coils | Coil | Coil | 640 | 660 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G42700.1 | 0 | |
| RefSeq | XP_021775868.1 | sec1 family domain-containing protein MIP3-like [Chenopodium quinoa] | 0 |
| F4IP69 | Sec1 family domain-containing protein MIP3 OS=Arabidopsis thaliana OX=3702 GN=MIP3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803N7H9 | Helicase ATP-binding domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg21324 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25995 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah011746 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g210000 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12019, Sbi_jg46947 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg21236 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009572 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl80425, Sgl82886 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015387, gene:ENSEOMG00000041012 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0017000, CQ.Regalona.r1.9BG0012730 |
| Apiaceae | Apium graveolens | 1 | Ag3G00525 |
| Arecaceae | Cocos nucifera | 1 | COCNU_15G002000 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103701250 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.856.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri5G30553 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G42700.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016247m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g24850.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g001690.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2871 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2987 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g07570 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0362s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g10100 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1691 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00008584 |
| Poaceae | Echinochloa crus-galli | 3 | AH04.398, BH04.406, CH04.424 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0671570, gene-QOZ80_9BG0695050 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0349310.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_064690 |
| Poaceae | Oryza coarctata | 2 | Oco10G001940, Oco22G002880 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g06810.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G252400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0104224 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr07G020660, Chr31G001530 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G177800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG033020, gene_TRIDC4BG017260 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G207700.1, TraesCS4B02G111200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb297610_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-51524 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g17619 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.1770, evm.TU.LG15.1413 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g19000 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_18_RagTag.161 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-28378 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20682 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19034 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000034l.21 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00019016 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-15747, nbisL1-mrna-23105, nbisL1-mrna-23106 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22913 |
| Salicaceae | Populus euphratica | 1 | populus_peu27119 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132629947 |
| Solanaceae | Solanum chilense | 1 | SOLCI001205800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007490 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7469 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G1001 |
| Zosteraceae | Zostera marina | 1 | Zosma02g17800.v3.1 |