Basic Information
Locus ID:
CQ.Regalona.r1.5AG0016510
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5A | 53843142 | 53844211 | - | CQ.Regalona.r1.5AG0016510 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 35,595.23 Da | 47.37 | 84.61 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 11 | 52 | 1.3E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 9 | 98 | 6.02E-13 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 3 | 89 | 2.8E-6 | - |
| SMART | SM00256 | fbox_2 | 14 | 54 | 0.0027 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 113 | 197 | 3.0E-11 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 8 | 54 | 9.656436 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23880.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_021775924.1 | F-box/kelch-repeat protein At3g23880-like [Chenopodium quinoa] | 0 |
| Q9LIR8 | F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana OX=3702 GN=At3g23880 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LMX1 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 13 | Ah001920, Ah003798, Ah004407, Ah004408, Ah004409, Ah008157 ... |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_9g204180, BVRB_9g219200 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg17163, Sbi_jg27532, Sbi_jg52462, Sbi_jg61771 |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg20871, Seu_jg423, Seu_jg7781 |
| Amaranthaceae | Suaeda aralocaspica | 11 | GOSA_00000873, GOSA_00000881, GOSA_00011522, GOSA_00011523 ... |
| Amaranthaceae | Suaeda glauca | 22 | Sgl11782, Sgl17271, Sgl24939, Sgl30083, Sgl33301, Sgl38521 ... |
| Amaranthaceae | Chenopodium album | 10 | gene:ENSEOMG00000016276, gene:ENSEOMG00000021311 ... |
| Amaranthaceae | Chenopodium quinoa | 15 | CQ.Regalona.r1.3BG0025960, CQ.Regalona.r1.3BG0025970 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_057782 |