Basic Information
Locus ID:
CQ.Regalona.r1.5AG0016500
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5A | 53832369 | 53833454 | - | CQ.Regalona.r1.5AG0016500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 42,099.71 Da | 40.98 | 87.09 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 15 | 56 | 2.5E-5 | IPR001810 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 130 | 321 | 1.57E-5 | IPR011043 |
| SUPERFAMILY | SSF81383 | F-box domain | 13 | 98 | 5.36E-13 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 16 | 55 | 3.5E-5 | - |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 118 | 306 | 5.1E-24 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23880.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_021775924.1 | F-box/kelch-repeat protein At3g23880-like [Chenopodium quinoa] | 0 |
| Q9LIR8 | F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana OX=3702 GN=At3g23880 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LE81 | Ubiquitin-like domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 13 | Ah001920, Ah003798, Ah004407, Ah004408, Ah004409, Ah008157 ... |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_9g204180, BVRB_9g219200 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg17163, Sbi_jg27532, Sbi_jg52462, Sbi_jg61771 |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg20871, Seu_jg423, Seu_jg7781 |
| Amaranthaceae | Suaeda aralocaspica | 11 | GOSA_00000873, GOSA_00000881, GOSA_00011522, GOSA_00011523 ... |
| Amaranthaceae | Suaeda glauca | 22 | Sgl11782, Sgl17271, Sgl24939, Sgl30083, Sgl33301, Sgl38521 ... |
| Amaranthaceae | Chenopodium album | 10 | gene:ENSEOMG00000016276, gene:ENSEOMG00000021311 ... |
| Amaranthaceae | Chenopodium quinoa | 15 | CQ.Regalona.r1.3BG0025960, CQ.Regalona.r1.3BG0025970 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_057782 |