Basic Information
Locus ID:
CQ.Regalona.r1.5AG0013680
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5A | 27736391 | 27741515 | + | CQ.Regalona.r1.5AG0013680 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.71 | 116,564.16 Da | 47.30 | 63.17 | -0.79 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 462 | 493 | 7.1E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 564 | 600 | 1.7E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 752 | 776 | 0.012 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 606 | 642 | 0.003 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 457 | 781 | 5.34E-58 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 424 | 545 | 1.5E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 546 | 803 | 1.1E-49 | IPR015943 |
| SMART | SM00320 | WD40_4 | 644 | 683 | 3.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 455 | 494 | 7.9E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 562 | 600 | 1.2E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 734 | 776 | 0.03 | IPR001680 |
| SMART | SM00320 | WD40_4 | 688 | 733 | 0.64 | IPR001680 |
| SMART | SM00320 | WD40_4 | 602 | 642 | 4.0E-8 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 609 | 643 | 10.838322 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 609 | 643 | 13.048234 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 755 | 785 | 9.305395 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 462 | 496 | 11.286501 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 462 | 496 | 13.616343 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 569 | 602 | 11.207411 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 569 | 609 | 13.616343 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 587 | 601 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 481 | 495 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 587 | 601 | 1.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 481 | 495 | 1.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 629 | 643 | 1.7E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 138 | 182 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 258 | 276 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 817 | 869 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 849 | 869 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 927 | 950 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 279 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 504 | 547 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 819 | 839 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37670.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_021750711.1 | WD repeat-containing protein 44-like [Chenopodium quinoa] | 0 |
| Q9XSC3 | WD repeat-containing protein 44 OS=Bos taurus OX=9913 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803N7K9 | WD_REPEATS_REGION domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology