Basic Information
Locus ID:
CQ.Regalona.r1.5AG0012020
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
domain in FBox and BRCT domain containing plant proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5A | 19661155 | 19662510 | - | CQ.Regalona.r1.5AG0012020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.70 | 52,575.15 Da | 47.71 | 115.79 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 15 | 53 | 2.4E-7 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 120 | 380 | 3.53E-6 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 12 | 95 | 1.06E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 3 | 51 | 8.7E-8 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 52 | 250 | 1.8E-6 | IPR032675 |
| SMART | SM00256 | fbox_2 | 19 | 59 | 3.2E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 13 | 61 | 9.68293 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G49020.1 | FBD, F-box and Leucine Rich Repeat domains containing protein. | 0 |
| RefSeq | XP_021776068.1 | F-box/LRR-repeat protein At3g26922-like [Chenopodium quinoa] | 0 |
| Q9SMT9 | FBD-associated F-box protein At3g49020 OS=Arabidopsis thaliana OX=3702 GN=At3g49020 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803MWF3 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 3 | Ah002911, Ah032964, Ah032965 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000000086, gene:ENSEOMG00000010796 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.5AG0012020, CQ.Regalona.r1.8BG0010370 ... |