halophFGD

Basic Information

Locus ID: CQ.Regalona.r1.5AG0011530

Species & Taxonomic ID: Chenopodium quinoa & 63459

Genome Assembly: GCA_040571445.1

Description: Belongs to the small heat shock protein (HSP20) family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5A	18209418	18210869	+	CQ.Regalona.r1.5AG0011530

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.31	24,673.64 Da	28.16	71.58	-0.70

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00298	ACD_sHsps_p23-like	31	102	7.52784E-12	-
Pfam	PF00011	Hsp20/alpha crystallin family	32	112	9.3E-9	IPR002068
SUPERFAMILY	SSF49764	HSP20-like chaperones	14	106	2.2E-14	IPR008978
Gene3D	G3DSA:2.60.40.790	-	3	105	2.7E-15	IPR008978
ProSiteProfiles	PS01031	Small heat shock protein (sHSP) domain profile.	11	118	14.417813	IPR002068
MobiDBLite	mobidb-lite	consensus disorder prediction	107	175	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	130	155	-	-

Best hit

Source	Best Hit ID	Description
TAIR	AT4G10250.1	HSP20-like chaperones superfamily protein. Columbia endomembrane-localized small heat shock protein
RefSeq	XP_021726882.1	uncharacterized protein LOC110694030 [Chenopodium quinoa]
Swiss-Prot	Q38806	22.0 kDa heat shock protein OS=Arabidopsis thaliana OX=3702 GN=HSP22.0 PE=2 SV=1
TrEMBL	A0A803NDG2	SHSP domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	8	jg1483, jg31856, jg32763, jg32765, jg35650, jg35651, jg3700 ... jg8472
Aizoaceae	Mesembryanthemum crystallinum	9	gene_11450, gene_13761, gene_15298, gene_15299, gene_2291 ... gene_2352, gene_6876, gene_6877, gene_6878
Amaranthaceae	Atriplex hortensis	9	Ah001585, Ah002837, Ah002882, Ah002883, Ah006593, Ah021124 ... Ah027771, Ah027772, Ah027775
Amaranthaceae	Beta vulgaris	4	BVRB_5g109980, BVRB_5g110000, BVRB_7g171580, BVRB_7g171590
Amaranthaceae	Salicornia bigelovii	12	Sbi_jg1495, Sbi_jg1496, Sbi_jg1497, Sbi_jg240, Sbi_jg28003 ... Sbi_jg28005, Sbi_jg28008, Sbi_jg32759, Sbi_jg32763, Sbi_jg35059, Sbi_jg35060, Sbi_jg35061
Amaranthaceae	Salicornia europaea	7	Seu_jg3249, Seu_jg3250, Seu_jg3251, Seu_jg4352, Seu_jg7558 ... Seu_jg7560, Seu_jg7562
Amaranthaceae	Suaeda aralocaspica	5	GOSA_00003423, GOSA_00003424, GOSA_00014476, GOSA_00014484 ... GOSA_00029407
Amaranthaceae	Suaeda glauca	13	Sgl25336, Sgl51116, Sgl53004, Sgl53404, Sgl56424, Sgl58280 ... Sgl58670, Sgl65289, Sgl69683, Sgl72683, Sgl76220, Sgl76221, Sgl76222
Amaranthaceae	Chenopodium album	19	gene:ENSEOMG00000004250, gene:ENSEOMG00000007309 ... gene:ENSEOMG00000007645, gene:ENSEOMG00000007648, gene:ENSEOMG00000007906, gene:ENSEOMG00000011295, gene:ENSEOMG00000020908, gene:ENSEOMG00000021354, gene:ENSEOMG00000022312, gene:ENSEOMG00000024186, gene:ENSEOMG00000024540, gene:ENSEOMG00000025014, gene:ENSEOMG00000026226, gene:ENSEOMG00000029457, gene:ENSEOMG00000034627, gene:ENSEOMG00000037210, gene:ENSEOMG00000040358, gene:ENSEOMG00000042020, gene:ENSEOMG00000043033
Amaranthaceae	Chenopodium quinoa	12	CQ.Regalona.r1.4AG0013280, CQ.Regalona.r1.4BG0015610 ... CQ.Regalona.r1.5AG0011530, CQ.Regalona.r1.5AG0011650, CQ.Regalona.r1.5AG0011660, CQ.Regalona.r1.5AG0011670, CQ.Regalona.r1.5BG0012590, CQ.Regalona.r1.5BG0012600, CQ.Regalona.r1.5BG0012610, CQ.Regalona.r1.5BG0012930, CQ.Regalona.r1.7AG0004990, CQ.Regalona.r1.9BG0000760
Anacardiaceae	Pistacia vera	8	pistato.v30087790, pistato.v30087800, pistato.v30087810 ... pistato.v30087820, pistato.v30169040, pistato.v30169050, pistato.v30169060, pistato.v30169070
Apiaceae	Apium graveolens	8	Ag10G01730, Ag11G04401, Ag3G00571, Ag3G02157, Ag4G00337 ... Ag4G01417, Ag7G00955, AgUnG00081
Arecaceae	Cocos nucifera	4	COCNU_03G000420, COCNU_03G000430, COCNU_08G001410 ... scaffold001608G000020
Arecaceae	Phoenix dactylifera	8	gene-LOC103700126, gene-LOC103707080, gene-LOC103707088 ... gene-LOC103708243, gene-LOC103719922, gene-LOC103719923, gene-LOC103720710, gene-LOC108510670
Asparagaceae	Asparagus officinalis	8	AsparagusV1_01.3399.V1.1, AsparagusV1_03.2970.V1.1 ... AsparagusV1_03.456.V1.1, AsparagusV1_05.1684.V1.1, AsparagusV1_07.3344.V1.1, AsparagusV1_07.3345.V1.1, AsparagusV1_08.563.V1.1, AsparagusV1_08.565.V1.1
Asteraceae	Flaveria trinervia	7	Ftri11G01874, Ftri12G25527, Ftri18G23397, Ftri18G28413 ... Ftri1G22587, Ftri1G30891, Ftri5G09365
Brassicaceae	Arabidopsis thaliana	4	AT1G54400.1, AT2G27140.1, AT5G04890.1, AT5G20970.1
Brassicaceae	Eutrema salsugineum	4	Thhalv10002090m.g.v1.0, Thhalv10014066m.g.v1.0 ... Thhalv10014544m.g.v1.0, Thhalv10023940m.g.v1.0
Brassicaceae	Schrenkiella parvula	4	Sp4g09910.v2.2, Sp6g23550.v2.2, Sp6g37930.v2.2 ... SpUn0001_0960.v2.2
Brassicaceae	Brassica nigra	7	BniB01g016760.2N, BniB02g041950.2N, BniB02g060180.2N ... BniB08g001900.2N, BniB08g010750.2N, BniB08g017090.2N, BniB08g032260.2N
Casuarinaceae	Casuarina equisetifolia	9	Ceq01G0813, Ceq04G1816, Ceq05G1512, Ceq08G1417, Ceq08G1418 ... Ceq08G1421, Ceq08G1422, Ceq08G1423, Ceq08G1598
Casuarinaceae	Casuarina glauca	9	Cgl01G0542, Cgl01G0543, Cgl04G1992, Cgl05G1498, Cgl08G1448 ... Cgl08G1449, Cgl08G1450, Cgl08G1451, Cgl08G1633
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno06g13920, gene.Cymno18g01870
Hydrocharitaceae	Thalassia testudinum	2	gene.Thate02g40070, gene.Thate08g10350
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-11573, nbisL1-mrna-419
Nitrariaceae	Nitraria sibirica	7	evm.TU.LG02.1392, evm.TU.LG02.1393, evm.TU.LG03.2032 ... evm.TU.LG03.2033, evm.TU.LG03.2035, evm.TU.LG09.21, evm.TU.LG10.892
Plantaginaceae	Plantago ovata	3	Pov_00003584, Pov_00014725, Pov_00026637
Plumbaginaceae	Limonium bicolor	10	Lb0G37095, Lb0G37096, Lb1G04368, Lb1G05689, Lb1G05690 ... Lb3G19269, Lb3G20361, Lb4G25882, Lb4G25884, Lb7G34992
Poaceae	Echinochloa crus-galli	13	AH01.1335, AH01.1337, AH01.1941, AH01.4924, BH01.1317 ... BH01.2298, BH01.2299, BH05.4219, CH01.1363, CH01.1364, CH01.2398, CH01.2399, CH05.4453
Poaceae	Eleusine coracana subsp. coracana	11	gene-QOZ80_1AG0026390, gene-QOZ80_2AG0125490 ... gene-QOZ80_2AG0125500, gene-QOZ80_2BG0181160, gene-QOZ80_2BG0181170, gene-QOZ80_3AG0223150, gene-QOZ80_3AG0223160, gene-QOZ80_3AG0234260, gene-QOZ80_3BG0268050, gene-QOZ80_3BG0268060, gene-QOZ80_UnG0729390
Poaceae	Hordeum vulgare	7	HORVU.MOREX.r3.1HG0037920.1, HORVU.MOREX.r3.1HG0037960.1 ... HORVU.MOREX.r3.4HG0333110.1, HORVU.MOREX.r3.4HG0333120.1, HORVU.MOREX.r3.4HG0401330.1, HORVU.MOREX.r3.4HG0401380.1, HORVU.MOREX.r3.4HG0401390.1
Poaceae	Lolium multiflorum	8	gene-QYE76_001115, gene-QYE76_017744, gene-QYE76_017745 ... gene-QYE76_043285, gene-QYE76_059657, gene-QYE76_063260, gene-QYE76_063263, gene-QYE76_070624
Poaceae	Oryza coarctata	8	Oco05G003320, Oco05G019380, Oco06G003400, Oco19G004720 ... Oco20G004670, Oco20G004680, Oco20G004700, Oco24G010690
Poaceae	Oryza sativa	5	LOC_Os03g06170.1, LOC_Os03g45330.1, LOC_Os03g45340.1 ... LOC_Os10g30162.1, LOC_Os10g30180.1
Poaceae	Paspalum vaginatum	5	gene-BS78_01G138300, gene-BS78_01G226400 ... gene-BS78_01G226500, gene-BS78_08G158000, gene-BS78_10G262200
Poaceae	Puccinellia tenuiflora	9	Pt_Chr0101078, Pt_Chr0101188, Pt_Chr0104592, Pt_Chr0104593 ... Pt_Chr0104627, Pt_Chr0104628, Pt_Chr0502440, Pt_Chr0704591, Pt_Chr0704944
Poaceae	Sporobolus alterniflorus	16	Chr01G008930, Chr01G008940, Chr04G003800, Chr04G019510 ... Chr04G019520, Chr04G025300, Chr06G013870, Chr06G020360, Chr06G020380, Chr07G007370, Chr09G009790, Chr12G028200, Chr12G028210, Chr13G015340, Chr15G014640, Chr15G014650
Poaceae	Thinopyrum elongatum	6	Tel1E01G257300, Tel1E01G257500, Tel4E01G034600 ... Tel4E01G459900, Tel4E01G460000, Tel5E01G060000
Poaceae	Triticum dicoccoides	6	gene_TRIDC1AG020290, gene_TRIDC1BG025340 ... gene_TRIDC1BG025350, gene_TRIDC4AG045830, gene_TRIDC4BG002540, gene_TRIDC7AG076900
Poaceae	Triticum aestivum	18	TraesCS1A02G137300.1, TraesCS1B02G155800.1 ... TraesCS1B02G155900.1, TraesCS1D02G138200.1, TraesCS1D02G138300.1, TraesCS4A02G298600.1, TraesCS4B02G014800.1, TraesCS4B02G014900.1, TraesCS4B02G273000.1, TraesCS4B02G273100.1, TraesCS4B02G273200.1, TraesCS4D02G013000.1, TraesCS4D02G013100.1, TraesCS4D02G272100.1, TraesCS5A02G024800.1, TraesCS5B02G022700.1.cds1, TraesCS7A02G553500.1, TraesCS7D02G540200.1
Poaceae	Zea mays	7	Zm00001eb032310_P001, Zm00001eb047490_P001 ... Zm00001eb052730_P001, Zm00001eb218280_P002, Zm00001eb218310_P001, Zm00001eb222770_P001, Zm00001eb222820_P002
Poaceae	Zoysia japonica	10	nbis-gene-20549, nbis-gene-21332, nbis-gene-39502 ... nbis-gene-39503, nbis-gene-39504, nbis-gene-4447, nbis-gene-47448, nbis-gene-47450, nbis-gene-48032, nbis-gene-48033
Poaceae	Zoysia macrostachya	8	Zma_g13291, Zma_g16087, Zma_g16088, Zma_g2039, Zma_g3140 ... Zma_g4387, Zma_g824, Zma_g825
Portulacaceae	Portulaca oleracea	11	evm.TU.LG01.1849, evm.TU.LG02.836, evm.TU.LG03.1374 ... evm.TU.LG12.18, evm.TU.LG14.1044, evm.TU.LG18.258, evm.TU.LG18.259, evm.TU.LG19.1089, evm.TU.LG24.1090, evm.TU.LG26.804, evm.TU.LG26.805
Posidoniaceae	Posidonia oceanica	2	gene.Posoc03g00840, gene.Posoc03g00880
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_13_RagTag.574, evm.TU.Scaffold_1_RagTag.436 ... evm.TU.Scaffold_2_RagTag.1216
Rhizophoraceae	Carallia pectinifolia	4	nbisL1-mrna-30495, nbisL1-mrna-3877, nbisL1-mrna-7743 ... nbisL1-mrna-7744
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-11231, nbisL1-mrna-17284
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-15960, nbisL1-mrna-18777, nbisL1-mrna-5468
Rhizophoraceae	Kandelia candel	4	add.evm.TU.utg000012l.97, evm.TU.utg000009l.490 ... evm.TU.utg000010l.48, evm.TU.utg000015l.309
Rhizophoraceae	Kandelia obovata	3	Maker00005938, Maker00008611, Maker00015768
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-12393, nbisL1-mrna-19010, nbisL1-mrna-4229
Rhizophoraceae	Rhizophora mangle	5	nbisL1-mrna-11960, nbisL1-mrna-15215, nbisL1-mrna-5507 ... nbisL1-mrna-584, nbisL1-mrna-585
Salicaceae	Populus euphratica	15	populus_peu06032, populus_peu08534, populus_peu08535 ... populus_peu08537, populus_peu08538, populus_peu16041, populus_peu16042, populus_peu16043, populus_peu19364, populus_peu19896, populus_peu28528, populus_peu29868, populus_peu36807, populus_peu36808, populus_peu36809
Solanaceae	Lycium barbarum	14	gene-LOC132599528, gene-LOC132600702, gene-LOC132600703 ... gene-LOC132605535, gene-LOC132622257, gene-LOC132626311, gene-LOC132626317, gene-LOC132628442, gene-LOC132628444, gene-LOC132629383, gene-LOC132629385, gene-LOC132629387, gene-LOC132629389, gene-LOC132645324
Solanaceae	Solanum chilense	4	SOLCI001488800, SOLCI002775900, SOLCI006503100 ... SOLCI007351700
Solanaceae	Solanum pennellii	8	gene-LOC107001806, gene-LOC107005111, gene-LOC107013765 ... gene-LOC107014083, gene-LOC107027604, gene-LOC107028824, gene-LOC107029772, gene-LOC107032702
Tamaricaceae	Reaumuria soongarica	3	MSTRG.15799_chr08_+, MSTRG.17902_chr09_-, STRG.1402_chr01_+
Tamaricaceae	Tamarix chinensis	5	TC01G1140, TC02G0949, TC05G0111, TC05G3042, TC11G1265
Zosteraceae	Zostera marina	3	Zosma02g16570.v3.1, Zosma05g33050.v3.1, Zosma06g14260.v3.1