Basic Information
Locus ID:
CQ.Regalona.r1.5AG0011470
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5A | 17986797 | 17987498 | - | CQ.Regalona.r1.5AG0011470 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.20 | 7,175.90 Da | 32.27 | 55.71 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22000.1 | RING-H2 group F2A. encodes a RING-type E3 ubiquitin ligase implicated in gametogenesis. Double mutant analyses with RHF1a suggests that RHF2a may be involved in targetting ICK4KRP6 for degradation following meiosis in order to allow the mitoses associated with megagametogenesis and microgametogenesis to occur. RHF2a is expressed in all four floral whorls and is present at ~8-fold higher levels than RHF1a in inflorescences by RT-PCR analyses. | 0 |
| RefSeq | XP_021713478.1 | E3 ubiquitin-protein ligase RHF2A-like isoform X1 [Chenopodium quinoa] | 0 |
| Q9ZT42 | E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana OX=3702 GN=RHF2A PE=2 SV=1 | 0 | |
| TrEMBL | A0A803MJV4 | Histone H4 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.5AG0011470 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr04G030200 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC2BG090510 |
| Poaceae | Zea mays | 1 | Zm00001eb296960_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-44220, nbis-gene-45785 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2748, evm.TU.LG08.408 |