Basic Information
Locus ID:
CQ.Regalona.r1.5AG0006600
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Small ubiquitinrelated modifier
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5A | 7674102 | 7677519 | - | CQ.Regalona.r1.5AG0006600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.25 | 30,983.87 Da | 38.58 | 83.72 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 199 | 268 | 1.2E-10 | IPR022617 |
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 37 | 99 | 2.1E-5 | IPR022617 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 9 | 108 | 1.06E-11 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 113 | 182 | 4.03E-5 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 188 | 268 | 2.15E-11 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 197 | 269 | 1.7E-13 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 111 | 185 | 7.1E-10 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 13 | 107 | 2.5E-18 | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021754277.1 | uncharacterized protein LOC110719610 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A0K9REE3 | Ubiquitin-like domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_075740 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_2153, gene_2154 |
| Amaranthaceae | Atriplex hortensis | 6 | Ah004369, Ah004371, Ah004372, Ah004373, Ah004402, Ah012689 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51245, Sgl56548 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000024781, gene:ENSEOMG00000025028 |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.5AG0001770, CQ.Regalona.r1.5AG0001780 ... |