Basic Information
Locus ID:
CQ.Regalona.r1.5AG0006200
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
SPA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5A | 7215819 | 7226712 | + | CQ.Regalona.r1.5AG0006200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.94 | 116,433.52 Da | 43.38 | 75.12 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 729 | 1046 | 8.62379E-38 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 911 | 942 | 0.02 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 820 | 858 | 0.034 | IPR001680 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 292 | 549 | 1.03E-13 | IPR011009 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 732 | 1047 | 1.44E-50 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 708 | 1050 | 1.2E-124 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 293 | 554 | 9.4E-18 | - |
| SMART | SM00320 | WD40_4 | 776 | 815 | 0.06 | IPR001680 |
| SMART | SM00320 | WD40_4 | 904 | 942 | 6.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 818 | 858 | 1.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 953 | 992 | 160.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 861 | 900 | 0.023 | IPR001680 |
| SMART | SM00320 | WD40_4 | 726 | 765 | 0.031 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1009 | 1048 | 31.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 911 | 944 | 10.653776 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 782 | 824 | 9.238559 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 911 | 951 | 13.215325 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 825 | 867 | 10.074014 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 802 | 816 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 929 | 943 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 802 | 816 | 5.6E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 929 | 943 | 5.6E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 845 | 859 | 5.6E-6 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11110.1 | SPA1-related 2. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants. | 0 |
| RefSeq | XP_021754309.1 | protein SPA1-RELATED 2-like [Chenopodium quinoa] | 0 |
| Q9T014 | Protein SPA1-RELATED 2 OS=Arabidopsis thaliana OX=3702 GN=SPA2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803LWF1 | Protein SPA1-RELATED 2-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology