Basic Information
Locus ID:
CQ.Regalona.r1.5AG0002800
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
PWWP domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5A | 3139702 | 3143856 | + | CQ.Regalona.r1.5AG0002800 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.93 | 118,173.71 Da | 52.46 | 62.24 | -0.81 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05162 | PWWP | 215 | 298 | 3.41971E-28 | - |
| Pfam | PF00855 | PWWP domain | 212 | 298 | 3.1E-20 | IPR000313 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 212 | 315 | 1.38E-28 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 204 | 308 | 1.9E-26 | - |
| SMART | SM00293 | PWWP_4 | 212 | 273 | 5.2E-10 | IPR000313 |
| ProSiteProfiles | PS50812 | PWWP domain profile. | 214 | 275 | 14.186384 | IPR000313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 832 | 900 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 837 | 876 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 745 | 783 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 181 | 201 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 502 | 650 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 995 | 1017 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 753 | 780 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 692 | 716 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 153 | 201 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 435 | 468 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 423 | 717 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 995 | 1025 | - | - |
| Coils | Coil | Coil | 1051 | 1078 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40340.2 | - | 0 |
| RefSeq | XP_021768147.1 | uncharacterized protein LOC110732506 isoform X1 [Chenopodium quinoa] | 0 |
| Q9FNE4 | PWWP domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=PDP3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803L5W2 | PWWP domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology