Basic Information
Locus ID:
CQ.Regalona.r1.5AG0001780
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
protein tag
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5A | 2015309 | 2021851 | + | CQ.Regalona.r1.5AG0001780 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.08 | 65,507.86 Da | 42.00 | 89.55 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01763 | Ubl_SUMO_like | 51 | 113 | 1.19243E-9 | - |
| CDD | cd01763 | Ubl_SUMO_like | 502 | 564 | 4.09011E-9 | - |
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 213 | 276 | 1.8E-5 | IPR022617 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 212 | 274 | 4.92E-6 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 23 | 114 | 8.88E-9 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 294 | 387 | 4.94E-8 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 496 | 563 | 6.68E-7 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 118 | 195 | 1.4E-8 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 27 | 118 | 2.5E-14 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 125 | 198 | 3.5E-12 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 289 | 388 | 5.7E-15 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 393 | 472 | 2.5E-5 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 482 | 565 | 3.6E-12 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 209 | 280 | 7.5E-8 | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26840.1 | small ubiquitin-like modifier 1. Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. | 0 |
| RefSeq | XP_021768257.1 | uncharacterized protein LOC110732604 [Chenopodium quinoa] | 0 |
| P55857 | Small ubiquitin-related modifier 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SUMO1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LTV5 | Ubiquitin-like domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_2153, gene_2154 |
| Amaranthaceae | Atriplex hortensis | 6 | Ah004369, Ah004371, Ah004372, Ah004373, Ah004402, Ah012689 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51245, Sgl56548 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000024781, gene:ENSEOMG00000025028 |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.5AG0001770, CQ.Regalona.r1.5AG0001780 ... |