Basic Information
Locus ID:
CQ.Regalona.r1.5AG0001770
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Small ubiquitin-related modifier
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5A | 1992679 | 1995948 | + | CQ.Regalona.r1.5AG0001770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 23,413.92 Da | 46.69 | 95.51 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 134 | 199 | 4.7E-9 | IPR022617 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 53 | 128 | 7.33E-5 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 130 | 206 | 1.52E-10 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 131 | 200 | 2.2E-11 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 49 | 1.0E-6 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 53 | 130 | 1.6E-5 | - |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 132 | 207 | 8.698482 | IPR000626 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021768259.1 | uncharacterized protein LOC110732605 isoform X2 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A0K9S3K2 | Ubiquitin-like domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_003160 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_2153, gene_2154 |
| Amaranthaceae | Atriplex hortensis | 6 | Ah004369, Ah004371, Ah004372, Ah004373, Ah004402, Ah012689 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl51245, Sgl56548 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000024781, gene:ENSEOMG00000025028 |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.5AG0001770, CQ.Regalona.r1.5AG0001780 ... |