Basic Information
Locus ID:
CQ.Regalona.r1.5AG0001530
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5A | 1718372 | 1730413 | + | CQ.Regalona.r1.5AG0001530 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.08 | 127,258.09 Da | 49.27 | 82.06 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 677 | 733 | 1.02078E-27 | - |
| Pfam | PF01426 | BAH domain | 427 | 526 | 2.6E-10 | IPR001025 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 737 | 1107 | 1.6E-37 | IPR001525 |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 696 | 731 | 1.5E-10 | IPR023780 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 664 | 734 | 6.41E-11 | IPR016197 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 568 | 1107 | 2.99E-77 | IPR029063 |
| Gene3D | G3DSA:2.30.30.490 | - | 329 | 512 | 6.6E-45 | IPR043151 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 682 | 1124 | 2.4E-194 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 897 | 1073 | 2.4E-194 | - |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 556 | 660 | 2.0E-11 | - |
| SMART | SM00439 | BAH_4 | 406 | 527 | 1.2E-16 | IPR001025 |
| SMART | SM00298 | chromo_7 | 677 | 736 | 5.0E-7 | IPR000953 |
| TIGRFAM | TIGR00675 | dcm: DNA (cytosine-5-)-methyltransferase | 746 | 1104 | 5.7E-33 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 678 | 731 | 11.634401 | IPR000953 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 406 | 527 | 17.783085 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 568 | 1114 | 47.680141 | IPR001525 |
| ProSitePatterns | PS00095 | C-5 cytosine-specific DNA methylases C-terminal signature. | 1089 | 1107 | - | IPR031303 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 701 | 721 | - | IPR023779 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 748 | 760 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 837 | 850 | 7.7E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 569 | 585 | 7.7E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 791 | 805 | 7.7E-11 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 122 | 151 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 127 | 142 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19020.2 | - | 0 |
| RefSeq | XP_021765549.1 | DNA (cytosine-5)-methyltransferase CMT3-like [Chenopodium quinoa] | 0 |
| Q94F87 | DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana OX=3702 GN=CMT2 PE=2 SV=3 | 0 | |
| TrEMBL | A0A803LTS4 | Cytosine-specific methyltransferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology