Basic Information
Locus ID:
CQ.Regalona.r1.5AG0000910
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5A | 1123527 | 1142841 | - | CQ.Regalona.r1.5AG0000910 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 85,736.48 Da | 44.33 | 90.73 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 322 | 458 | 1.70248E-70 | - |
| CDD | cd18015 | DEXHc_RecQ1 | 72 | 321 | 5.61853E-121 | - |
| Pfam | PF16124 | RecQ zinc-binding | 461 | 516 | 4.6E-10 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 354 | 448 | 5.2E-16 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 138 | 301 | 5.2E-17 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 170 | 464 | 5.05E-56 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 123 | 321 | 1.3E-82 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 522 | 622 | 1.1E-23 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 322 | 519 | 4.6E-64 | IPR027417 |
| SMART | SM00487 | ultradead3 | 127 | 330 | 2.1E-24 | IPR014001 |
| SMART | SM00490 | helicmild6 | 368 | 449 | 5.6E-27 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 137 | 554 | 9.3E-158 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 339 | 488 | 19.666046 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 139 | 314 | 23.54915 | IPR014001 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 733 | 758 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 727 | 764 | - | - |
| Coils | Coil | Coil | 4 | 38 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.1 | RECQ helicase L2. Encodes a (d)NTP-dependent 3'->5' DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro. | 0 |
| RefSeq | XP_021768372.1 | mediator of RNA polymerase II transcription subunit 34 isoform X1 [Chenopodium quinoa] | 0 |
| Q9FT73 | ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana OX=3702 GN=RECQL2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803L6E4 | ATP-dependent DNA helicase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology