Basic Information
Locus ID:
CQ.Regalona.r1.4BG0022820
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
RNA polymerase II-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4B | 68593248 | 68596576 | + | CQ.Regalona.r1.4BG0022820 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 58,952.67 Da | 34.97 | 82.34 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13414 | TPR repeat | 381 | 419 | 1.1E-6 | - |
| Pfam | PF00646 | F-box domain | 10 | 51 | 1.0E-9 | IPR001810 |
| Pfam | PF07762 | Protein of unknown function (DUF1618) | 246 | 348 | 1.3E-5 | IPR011676 |
| SUPERFAMILY | SSF48452 | TPR-like | 376 | 484 | 8.65E-26 | IPR011990 |
| SUPERFAMILY | SSF81383 | F-box domain | 6 | 222 | 1.83E-13 | IPR036047 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 371 | 472 | 2.7E-29 | IPR011990 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 103 | 1.2E-8 | - |
| SMART | SM00256 | fbox_2 | 10 | 49 | 1.1E-6 | IPR001810 |
| SMART | SM00028 | tpr_5 | 409 | 440 | 0.99 | IPR019734 |
| SMART | SM00028 | tpr_5 | 441 | 474 | 0.36 | IPR019734 |
| SMART | SM00028 | tpr_5 | 374 | 407 | 0.0015 | IPR019734 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 441 | 474 | 8.0539 | IPR019734 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 374 | 407 | 9.2634 | IPR019734 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56440.2 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_021758831.1 | putative F-box protein At1g60370 [Chenopodium quinoa] | 0 |
| Q9H6T3 | RNA polymerase II-associated protein 3 OS=Homo sapiens OX=9606 GN=RPAP3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803ML08 | TPR_REGION domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology