Basic Information
Locus ID:
CQ.Regalona.r1.4BG0022490
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
RNA polymerase II-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4B | 68152162 | 68156765 | + | CQ.Regalona.r1.4BG0022490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 64,557.76 Da | 36.15 | 82.44 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 11 | 47 | 2.4E-8 | IPR001810 |
| Pfam | PF07762 | Protein of unknown function (DUF1618) | 245 | 336 | 1.4E-6 | IPR011676 |
| SUPERFAMILY | SSF48452 | TPR-like | 414 | 532 | 1.54E-26 | IPR011990 |
| SUPERFAMILY | SSF81383 | F-box domain | 9 | 66 | 2.22E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 6 | 49 | 1.8E-6 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 411 | 540 | 1.7E-31 | IPR011990 |
| SMART | SM00028 | tpr_5 | 414 | 447 | 3.4E-4 | IPR019734 |
| SMART | SM00028 | tpr_5 | 481 | 514 | 25.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 448 | 480 | 1.1 | IPR019734 |
| SMART | SM00256 | fbox_2 | 10 | 50 | 3.3E-6 | IPR001810 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 414 | 447 | 9.0569 | IPR019734 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 539 | 562 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 533 | 570 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56440.2 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_021758808.1 | putative F-box/kelch-repeat protein At1g15680 [Chenopodium quinoa] | 0 |
| Q9LMR4 | Putative F-box/kelch-repeat protein At1g15680 OS=Arabidopsis thaliana OX=3702 GN=At1g15680 PE=4 SV=1 | 0 | |
| TrEMBL | A0A803LYJ3 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology