Basic Information
Locus ID:
CQ.Regalona.r1.4BG0020830
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4B | 65406453 | 65414435 | - | CQ.Regalona.r1.4BG0020830 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.27 | 104,719.92 Da | 49.90 | 70.16 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 604 | 641 | 8.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 563 | 599 | 1.0E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 455 | 487 | 2.0E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 450 | 780 | 5.19E-56 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 443 | 802 | 1.2E-59 | IPR015943 |
| SMART | SM00320 | WD40_4 | 644 | 682 | 2.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 561 | 599 | 8.0E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 689 | 734 | 2.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 602 | 641 | 3.0E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 735 | 776 | 1.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 449 | 488 | 1.4E-6 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 568 | 602 | 11.497408 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 456 | 489 | 10.363778 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 608 | 642 | 10.469233 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 456 | 497 | 12.580379 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 608 | 642 | 12.580379 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 568 | 608 | 14.552052 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 586 | 600 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 475 | 489 | 2.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 586 | 600 | 2.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 628 | 642 | 2.1E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 34 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 394 | 437 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 398 | 419 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 522 | 543 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 529 | 543 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 833 | 860 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 80 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 838 | 860 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15470.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_021754818.1 | uncharacterized protein LOC110720126 isoform X1 [Chenopodium quinoa] | 0 |
| Q498F0 | WD repeat-containing protein 44 OS=Xenopus laevis OX=8355 GN=wdr44 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803MHA0 | WD_REPEATS_REGION domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology