Basic Information
Locus ID:
CQ.Regalona.r1.4BG0020520
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4B | 64938830 | 64940935 | + | CQ.Regalona.r1.4BG0020520 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.99 | 20,245.77 Da | 76.53 | 71.05 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 23 | 73 | 2.37085E-22 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 25 | 71 | 1.1E-9 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 20 | 85 | 2.87E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 7 | 104 | 3.2E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 25 | 71 | 2.8E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 25 | 72 | 12.607302 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 40 | 49 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 95 | 122 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 108 | 122 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27470.1 | RING membrane-anchor 3. Encodes a RING finger E3 ubiquitin ligase. | 0 |
| RefSeq | XP_021754864.1 | E3 ubiquitin-protein ligase RMA3-like [Chenopodium quinoa] | 0 |
| Q8GUK7 | E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R703 | RING-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_099420 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology