HalophFGD

  • Home
  • Species
  • Search
  • Tools
    • Blast
    • GO enrichment
    • KEGG enrichment
    • Genome browser
    • Sequence extract
    • Network
    • Motif Enrichment
    • Motif Scan
    • Primer Design
  • Download
  • Manual
  • Contact
Basic Information
Locus ID: CQ.Regalona.r1.4BG0020110
Species & Taxonomic ID: Chenopodium quinoa & 63459
Genome Assembly: GCA_040571445.1
Description: F-box-like
Maps and Mapping Data
Chromosome Start End Strand ID
chr4B 64180062 64182823 - CQ.Regalona.r1.4BG0020110
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
4.97 27,134.99 Da 46.29 86.38 0.07
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
SUPERFAMILY SSF50965 Galactose oxidase, central domain 37 186 8.11E-6 IPR011043
TIGRFAM TIGR01640 F_box_assoc_1: F-box protein interaction domain 21 212 4.2E-24 IPR017451
Best hit
Source Best Hit ID Description E-value
RefSeq XP_021754878.1 F-box/kelch-repeat protein At3g23880-like, partial [Chenopodium quinoa] 0
TrEMBL A0A0K9R046 F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_121230 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Amaranthaceae Atriplex hortensis 13 Ah001920, Ah003798, Ah004407, Ah004408, Ah004409, Ah008157 ...
Ah010458, Ah010828, Ah010831, Ah022482, Ah032943, Ah038021, Ah038025
Amaranthaceae Beta vulgaris 2 BVRB_9g204180, BVRB_9g219200
Amaranthaceae Salicornia bigelovii 4 Sbi_jg17163, Sbi_jg27532, Sbi_jg52462, Sbi_jg61771
Amaranthaceae Salicornia europaea 3 Seu_jg20871, Seu_jg423, Seu_jg7781
Amaranthaceae Suaeda aralocaspica 11 GOSA_00000873, GOSA_00000881, GOSA_00011522, GOSA_00011523 ...
GOSA_00013418, GOSA_00015200, GOSA_00015210, GOSA_00017501, GOSA_00019733, GOSA_00019734, GOSA_00019739
Amaranthaceae Suaeda glauca 22 Sgl11782, Sgl17271, Sgl24939, Sgl30083, Sgl33301, Sgl38521 ...
Sgl38541, Sgl38559, Sgl45548, Sgl45549, Sgl45550, Sgl45552, Sgl50333, Sgl50335, Sgl50336, Sgl78539, Sgl78553, Sgl78621, Sgl78622, Sgl81029, Sgl81099, Sgl81100
Amaranthaceae Chenopodium album 10 gene:ENSEOMG00000016276, gene:ENSEOMG00000021311 ...
gene:ENSEOMG00000025450, gene:ENSEOMG00000032638, gene:ENSEOMG00000035631, gene:ENSEOMG00000037957, gene:ENSEOMG00000038425, gene:ENSEOMG00000039745, gene:ENSEOMG00000051485, gene:ENSEOMG00000051554
Amaranthaceae Chenopodium quinoa 15 CQ.Regalona.r1.3BG0025960, CQ.Regalona.r1.3BG0025970 ...
CQ.Regalona.r1.4AG0010490, CQ.Regalona.r1.4BG0020100, CQ.Regalona.r1.4BG0020110, CQ.Regalona.r1.5AG0016500, CQ.Regalona.r1.5AG0016510, CQ.Regalona.r1.5BG0001640, CQ.Regalona.r1.5BG0017780, CQ.Regalona.r1.5BG0020740, CQ.Regalona.r1.7BG0009400, CQ.Regalona.r1.7BG0009410, CQ.Regalona.r1.9AG0013250, CQ.Regalona.r1.9AG0015130, CQ.Regalona.r1.9AG0015140
Poaceae Lolium multiflorum 1 gene-QYE76_057782
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.