Basic Information
Locus ID:
CQ.Regalona.r1.4BG0019970
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
SPA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4B | 63891811 | 63898982 | - | CQ.Regalona.r1.4BG0019970 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.02 | 98,653.62 Da | 54.93 | 80.67 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 661 | 695 | 4.7E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 753 | 788 | 9.0E-4 | IPR001680 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 91 | 356 | 1.57E-18 | IPR011009 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 570 | 890 | 1.98E-50 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 548 | 893 | 3.1E-117 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 95 | 357 | 1.2E-23 | - |
| SMART | SM00320 | WD40_4 | 655 | 695 | 1.6E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 567 | 602 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 613 | 652 | 29.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 847 | 891 | 73.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 750 | 788 | 8.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 707 | 746 | 1.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 797 | 836 | 4.5 | IPR001680 |
| SMART | SM00220 | serkin_6 | 44 | 347 | 8.8E-4 | IPR000719 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 757 | 790 | 10.521959 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 662 | 697 | 10.627413 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 662 | 697 | 12.780889 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 347 | 9.700884 | IPR000719 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 757 | 790 | 12.647216 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 775 | 789 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 639 | 653 | 6.8E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 775 | 789 | 6.8E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 682 | 696 | 6.8E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 416 | 435 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 505 | 519 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 493 | 519 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 56 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 191 | 225 | - | - |
| Coils | Coil | Coil | 360 | 380 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15354.3 | - | 0 |
| RefSeq | XP_021722829.1 | protein SPA1-RELATED 4-like isoform X1 [Chenopodium quinoa] | 0 |
| Q9LJR3 | Protein SPA1-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=SPA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803N253 | Protein SPA1-RELATED 3-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology