Basic Information
Locus ID:
CQ.Regalona.r1.4BG0018000
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4B | 58530510 | 58545760 | - | CQ.Regalona.r1.4BG0018000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.36 | 99,227.70 Da | 35.82 | 84.68 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 2 | 196 | 1.1321E-89 | - |
| CDD | cd18794 | SF2_C_RecQ | 197 | 332 | 4.64352E-54 | - |
| Pfam | PF16124 | RecQ zinc-binding | 336 | 397 | 3.0E-12 | IPR032284 |
| Pfam | PF09382 | RQC domain | 400 | 497 | 2.8E-23 | IPR018982 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 217 | 322 | 1.2E-19 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 16 | 175 | 2.1E-18 | IPR011545 |
| Pfam | PF14493 | Helix-turn-helix domain | 652 | 746 | 1.6E-15 | IPR029491 |
| Pfam | PF00570 | HRDC domain | 546 | 611 | 2.4E-13 | IPR002121 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 55 | 337 | 7.45E-53 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 540 | 616 | 2.62E-16 | IPR010997 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 395 | 498 | 1.29E-23 | IPR036390 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 195 | 8.2E-73 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 197 | 398 | 7.5E-55 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 399 | 523 | 6.3E-35 | IPR036388 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 539 | 618 | 7.7E-16 | IPR044876 |
| SMART | SM00490 | helicmild6 | 242 | 323 | 4.0E-27 | IPR001650 |
| SMART | SM00956 | RQC_2 | 404 | 508 | 7.2E-23 | IPR018982 |
| SMART | SM00487 | ultradead3 | 10 | 207 | 1.9E-29 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 5 | 455 | 4.9E-149 | IPR004589 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 541 | 621 | 18.115591 | IPR002121 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 213 | 368 | 19.835346 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 22 | 189 | 21.480597 | IPR014001 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.4 | - | 0 |
| RefSeq | XP_021769787.1 | uncharacterized protein LOC110734037 isoform X1 [Chenopodium quinoa] | 0 |
| P71359 | ATP-dependent DNA helicase RecQ OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=recQ PE=3 SV=1 | 0 | |
| TrEMBL | A0A803MZ07 | ATP-dependent DNA helicase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology