Basic Information
Locus ID:
CQ.Regalona.r1.4BG0016260
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4B | 48659463 | 48675815 | + | CQ.Regalona.r1.4BG0016260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 101,440.21 Da | 62.46 | 69.94 | -0.87 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 838 | 878 | 8.67759E-21 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 836 | 883 | 7.2E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 838 | 884 | 2.83E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 821 | 889 | 1.9E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 839 | 878 | 10.733671 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 179 | 195 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 212 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 81 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 85 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 698 | 731 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 196 | 212 | - | - |
| Coils | Coil | Coil | 770 | 790 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021718873.1 | uncharacterized protein LOC110686567 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A803NAQ2 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology