Basic Information
Locus ID:
CQ.Regalona.r1.4BG0014130
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4B | 28396242 | 28407656 | - | CQ.Regalona.r1.4BG0014130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.21 | 83,729.97 Da | 53.29 | 68.47 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 457 | 583 | 5.96577E-62 | - |
| CDD | cd00201 | WW | 21 | 50 | 5.89999E-4 | IPR001202 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 466 | 574 | 1.3E-33 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 267 | 437 | 6.1E-50 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 315 | 590 | 6.57E-74 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 12 | 53 | 3.94E-8 | IPR036020 |
| Gene3D | G3DSA:3.40.50.300 | - | 454 | 615 | 8.8E-57 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 11 | 59 | 1.7E-5 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 246 | 453 | 2.5E-80 | IPR027417 |
| SMART | SM00487 | ultradead3 | 262 | 459 | 3.5E-62 | IPR014001 |
| SMART | SM00490 | helicmild6 | 494 | 574 | 1.7E-34 | IPR001650 |
| SMART | SM00456 | ww_5 | 19 | 52 | 3.1E-5 | IPR001202 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 469 | 613 | 25.735935 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 274 | 448 | 29.723377 | IPR014001 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 18 | 52 | 11.0338 | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 394 | 402 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 24 | 50 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 83 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 647 | 673 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 98 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 614 | 762 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G14610.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_021733054.1 | ATP-dependent RNA helicase-like protein DB10 [Chenopodium quinoa] | 0 |
| P46942 | ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris OX=4096 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803MUF8 | DEAD-box ATP-dependent RNA helicase 46 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology