Basic Information
Locus ID:
CQ.Regalona.r1.4BG0014080
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4B | 27216932 | 27232445 | + | CQ.Regalona.r1.4BG0014080 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.57 | 45,661.83 Da | 37.15 | 91.46 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00983 | recA | 65 | 385 | 0.0 | IPR013765 |
| Pfam | PF00154 | recA bacterial DNA recombination protein | 68 | 330 | 2.6E-116 | IPR013765 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 330 | 386 | 1.06E-17 | IPR023400 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 66 | 329 | 2.48E-54 | IPR027417 |
| Gene3D | G3DSA:3.30.250.10 | - | 332 | 388 | 3.8E-20 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 88 | 329 | 3.4E-78 | IPR027417 |
| SMART | SM00382 | AAA_5 | 117 | 288 | 2.6E-10 | IPR003593 |
| TIGRFAM | TIGR02012 | tigrfam_recA: protein RecA | 65 | 385 | 5.8E-143 | IPR013765 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 96 | 254 | 27.325504 | IPR020588 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 259 | 334 | 27.04137 | IPR020587 |
| ProSitePatterns | PS00321 | recA signature. | 273 | 281 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 187 | 216 | 5.3E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 305 | 334 | 5.3E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 153 | 182 | 5.3E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 359 | 376 | 5.3E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 225 | 254 | 5.3E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 270 | 298 | 5.3E-75 | IPR013765 |
| Hamap | MF_00268 | Protein RecA [recA]. | 66 | 391 | 44.639824 | IPR013765 |
| Coils | Coil | Coil | 409 | 417 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79050.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_021741976.1 | DNA repair protein recA homolog 1, chloroplastic [Chenopodium quinoa] | 0 |
| Q39199 | DNA repair protein recA homolog 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RECA PE=2 SV=1 | 0 | |
| TrEMBL | A0A803NA37 | DNA repair protein recA homolog 1, chloroplastic OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology