Basic Information
Locus ID:
CQ.Regalona.r1.4BG0011390
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4B | 13343244 | 13350279 | - | CQ.Regalona.r1.4BG0011390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.81 | 54,633.68 Da | 48.57 | 79.29 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 5 | 43 | 3.6E-7 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 5 | 51 | 3.66E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 39 | 4.4E-7 | - |
| SMART | SM00256 | fbox_2 | 3 | 43 | 9.9E-4 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 113 | 253 | 7.5E-13 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 47 | 9.470975 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 403 | 428 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G10190.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_021731453.1 | putative F-box protein At3g16210 [Chenopodium quinoa] | 0 |
| O82622 | Putative F-box protein At4g10190 OS=Arabidopsis thaliana OX=3702 GN=At4g10190 PE=4 SV=2 | 0 | |
| TrEMBL | A0A803NDB4 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 13 | Ah000393, Ah000394, Ah000399, Ah003949, Ah003953, Ah003954 ... |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_4g071880, BVRB_5g113260 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg11627, Sbi_jg45701, Sbi_jg46774, Sbi_jg46778 ... |
| Amaranthaceae | Salicornia europaea | 4 | Seu_jg10869, Seu_jg18452, Seu_jg20876, Seu_jg20880 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00001449, GOSA_00014071 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl33340, Sgl38687, Sgl45685, Sgl50446, Sgl67624, Sgl67625 |
| Amaranthaceae | Chenopodium album | 8 | gene:ENSEOMG00000006113, gene:ENSEOMG00000027208 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.4BG0011210, CQ.Regalona.r1.4BG0011390 ... |