Basic Information
Locus ID:
CQ.Regalona.r1.4BG0009420
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4B | 9653043 | 9653564 | - | CQ.Regalona.r1.4BG0009420 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 19,293.69 Da | 52.73 | 73.30 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 97 | 139 | 5.66368E-16 | - |
| Pfam | PF13639 | Ring finger domain | 97 | 139 | 8.5E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 96 | 146 | 6.77E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 72 | 146 | 3.3E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 97 | 138 | 2.8E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 97 | 139 | 12.312242 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76410.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021742433.1 | E3 ubiquitin-protein ligase ATL15-like [Chenopodium quinoa] | 0 |
| Q8LC69 | RING-H2 finger protein ATL8 OS=Arabidopsis thaliana OX=3702 GN=ATL8 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803KPD1 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12012 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005915 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17023, Sbi_jg61572 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg301 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008349 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl24613, Sgl29761, Sgl29766 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000011364 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0009290, CQ.Regalona.r1.4BG0009420 |
| Tamaricaceae | Tamarix chinensis | 2 | TC06G0771, TC06G0772 |