Basic Information
Locus ID:
CQ.Regalona.r1.4BG0009300
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4B | 9551141 | 9551692 | - | CQ.Regalona.r1.4BG0009300 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.95 | 20,365.77 Da | 46.53 | 91.53 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF57850 | RING/U-box | 78 | 124 | 4.5E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 71 | 154 | 2.0E-7 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 80 | 121 | 10.379599 | IPR001841 |
| Coils | Coil | Coil | 182 | 183 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72200.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021771798.1 | RING-H2 finger protein ATL11-like [Chenopodium quinoa] | 0 |
| Q84W40 | RING-H2 finger protein ATL11 OS=Arabidopsis thaliana OX=3702 GN=ATL11 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803KPC5 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12013 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah005893 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg512 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg4129 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00008342, GOSA_00008343 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl24620, Sgl24646, Sgl29765, Sgl29773 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0009190, CQ.Regalona.r1.4BG0009300 |