Basic Information
Locus ID:
CQ.Regalona.r1.4BG0007850
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4B | 7630806 | 7641163 | - | CQ.Regalona.r1.4BG0007850 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.52 | 121,155.48 Da | 36.47 | 82.47 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 447 | 484 | 0.0024 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 879 | 912 | 0.082 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 332 | 526 | 2.2E-25 | IPR036322 |
| SUPERFAMILY | SSF75011 | 3-carboxy-cis,cis-mucoante lactonizing enzyme | 898 | 1070 | 1.14E-9 | - |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 466 | 917 | 1.33E-41 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 310 | 537 | 4.2E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 932 | 1071 | 2.7E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 541 | 677 | 8.7E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 700 | 931 | 5.8E-23 | IPR015943 |
| SMART | SM00320 | WD40_4 | 830 | 870 | 2.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 443 | 484 | 0.0023 | IPR001680 |
| SMART | SM00320 | WD40_4 | 962 | 1004 | 24.0 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 5.3E-4 | IPR006594 |
| SMART | SM00668 | ctlh | 34 | 92 | 6.7E-14 | IPR006595 |
| SMART | SM00320 | WD40_4 | 576 | 616 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1018 | 1059 | 79.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 338 | 377 | 0.026 | IPR001680 |
| SMART | SM00320 | WD40_4 | 486 | 527 | 0.054 | IPR001680 |
| SMART | SM00320 | WD40_4 | 530 | 573 | 89.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 785 | 827 | 230.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 873 | 912 | 6.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 402 | 437 | 13.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 344 | 386 | 8.837541 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 594 | 625 | 9.004632 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 880 | 914 | 9.467419 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 9.767425 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.475842 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 450 | 493 | 8.837541 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 880 | 921 | 11.778342 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 471 | 485 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1077 | 1098 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1061 | 1098 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27030.1 | TOPLESS-related 3. | 0 |
| RefSeq | XP_021742617.1 | topless-related protein 3-like [Chenopodium quinoa] | 0 |
| Q84JM4 | Topless-related protein 3 OS=Arabidopsis thaliana OX=3702 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KNW6 | Topless-related protein 3-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology