Basic Information
Locus ID:
CQ.Regalona.r1.4BG0007530
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4B | 7372004 | 7376913 | - | CQ.Regalona.r1.4BG0007530 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 72,525.61 Da | 47.16 | 79.60 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 241 | 438 | 8.36617E-94 | - |
| CDD | cd18794 | SF2_C_RecQ | 439 | 572 | 4.85467E-66 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 249 | 415 | 7.8E-16 | IPR011545 |
| Pfam | PF16124 | RecQ zinc-binding | 575 | 643 | 1.6E-12 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 455 | 562 | 3.5E-16 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 286 | 583 | 1.0E-50 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 205 | 438 | 9.6E-82 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 439 | 647 | 5.2E-60 | IPR027417 |
| SMART | SM00487 | ultradead3 | 243 | 447 | 4.7E-25 | IPR014001 |
| SMART | SM00490 | helicmild6 | 481 | 563 | 6.8E-23 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 241 | 645 | 3.5E-152 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 255 | 431 | 19.085096 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 453 | 603 | 18.754814 | IPR001650 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 109 | 158 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 98 | 158 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 192 | 211 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05740.1 | RECQ helicase l1. | 0 |
| RefSeq | XP_021742657.1 | ATP-dependent DNA helicase Q-like 1 [Chenopodium quinoa] | 0 |
| Q9FT74 | ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QQ50 | ATP-dependent DNA helicase OS=Spinacia oleracea OX=3562 GN=SOVF_153870 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology