Basic Information
Locus ID:
CQ.Regalona.r1.4BG0004980
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
dna binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4B | 4906080 | 4906991 | - | CQ.Regalona.r1.4BG0004980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.14 | 32,053.92 Da | 50.72 | 63.43 | -0.50 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09520.1 | 0 | |
| RefSeq | XP_021734541.1 | transcription factor Sox-1-like [Chenopodium quinoa] | 0 |
| TrEMBL | A0A0K9Q7I4 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_216930 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg1351, jg28286 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_10267 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah002702, Ah005379 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g079530 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg13372, Sbi_jg17628, Sbi_jg52474, Sbi_jg62296 |
| Amaranthaceae | Salicornia europaea | 4 | Seu_jg873, Seu_jg9366, Seu_jg9367, Seu_jg9368 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007375 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl24073, Sgl29256 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000027907, gene:ENSEOMG00000040487 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0005070, CQ.Regalona.r1.4BG0004980 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30231650 |
| Apiaceae | Apium graveolens | 4 | Ag1G00588, Ag3G00471, Ag6G02887, Ag8G01825 |
| Arecaceae | Cocos nucifera | 2 | COCNU_12G000250, scaffold004145G000040 |
| Arecaceae | Phoenix dactylifera | 5 | gene-LOC103707684, gene-LOC103718161, gene-LOC103721210 ... |
| Asteraceae | Flaveria trinervia | 6 | Ftri14G00997, Ftri15G12616, Ftri15G31705, Ftri15G32367 ... |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G09520.1, AT3G17460.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10008580m.g.v1.0, Thhalv10022081m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g08120.v2.2, Sp3g15630.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB01g047330.2N, BniB02g004750.2N, BniB04g030350.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0451 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno03g14010 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g00610 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-12201 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1671 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00007090 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G07266, Lb1G07269 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.1358, AH05.830, BH02.1413, BH05.927, CH02.1550 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0405930, gene-QOZ80_5BG0454060 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0017870.1, HORVU.MOREX.r3.3HG0251790.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_009269 |
| Poaceae | Oryza coarctata | 5 | Oco02G006700, Oco02G008740, Oco03G000540, Oco10G001800 ... |
| Poaceae | Oryza sativa | 5 | LOC_Os01g14330.1, LOC_Os01g18810.1, LOC_Os05g04540.1 ... |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_03G127800, gene-BS78_09G034700 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0500343, Pt_Chr0500446, Pt_Chr0603933, Pt_Chr0604101 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr01G012890, Chr02G021440, Chr03G006790, Chr08G007180 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel1E01G160200, Tel3E01G296700, Tel3E01G297100 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC1AG011230, gene_TRIDC1BG014010 ... |
| Poaceae | Triticum aestivum | 7 | TraesCS1A02G080100.1, TraesCS1B02G098100.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb129830_P001, Zm00001eb417400_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-13427, nbis-gene-50139 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g26382 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG08.1251, evm.TU.LG18.1505, evm.TU.LG20.373 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g12640, gene.Posoc02g34430 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.60391.6, evm.TU.60392.6, evm.TU.Scaffold_3_RagTag.710 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1260 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-6072 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-5115, nbisL1-mrna-6398 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000012l.8, add.evm.TU.utg000019l.327 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00011000, Maker00012432 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-18824, nbisL1-mrna-19932 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-13144, nbisL1-mrna-16 |
| Salicaceae | Populus euphratica | 1 | populus_peu22338 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132598509, gene-LOC132626630 |
| Solanaceae | Solanum chilense | 3 | SOLCI003773600, SOLCI006623400, SOLCI007109200 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107002007, gene-LOC107008524, gene-LOC107013617 |
| Tamaricaceae | Reaumuria soongarica | 2 | MSTRG.17665_chr09_-, STRG.21961_chr08_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G1440, TC12G1742 |
| Zosteraceae | Zostera marina | 2 | Zosma04g26730.v3.1, Zosma213g00050.v3.1 |